2012 LEGACY SITE
Chinese Hamster
Genome Database
 

 

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Databases available for CHOBLAST



Nucleotide sequence databases (blastn, tblastn, tblastx):

  Genome (Scaffolds)

  NameRelease Date/
Assembly Version
Reference
1) CHO-K1[ATCC]_RefSeq_201408 May 2014
Assembly v1.0

Xu X, Nagarajan H, Lewis NE et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology, 29(8), 735-741 (2011). [LINK]

2) CH_RefSeq_201408 May 2014
Assembly v1.0

Lewis NE, Liu X, Li Y et al. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nature Biotechnology, 31(8), 759-765 (2013). [LINK]

3) CHO-K1[ATCC]_GenBank_201126 August 2011
Assembly v1.0

Xu X, Nagarajan H, Lewis NE et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology, 29(8), 735-741 (2011). [LINK]

4) CH_GenBank_201312 July 2013
Assembly v1.0

Lewis NE, Liu X, Li Y et al. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nature Biotechnology, 31(8), 759-765 (2013). [LINK]

5) CH-17A/GY_Chr_GenBank_201329 August 2013
Assembly v1.0

Brinkrolf K, Rupp O, Laux H et al. Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology, 31(8), 694-695 (2013). [LINK]

  Transcripts (RNA)

NameRelease Date/
Assembly Version/
Annotation Version
Reference
6) CHO-K1[ATCC]_RefSeq_201408 May 2014
Assembly v1.0
Annotation v101

Xu X, Nagarajan H, Lewis NE et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology, 29(8), 735-741 (2011). [LINK]

7) CHO-K1[ATCC]_RefSeq_201215 March 2012
Assembly v1.0
Annotation v1

Xu X, Nagarajan H, Lewis NE et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology, 29(8), 735-741 (2011). [LINK]

8) CH_RefSeq_201408 May 2014
Assembly v1.0
Annotation v101

Lewis NE, Liu X, Li Y et al. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nature Biotechnology, 31(8), 759-765 (2013). [LINK]


Amino Acid Sequence Databases (blastp, blastx):

  Proteins

NameRelease Date/
Assembly Version/
Annotation Version
Reference
1) CHO-K1[ATCC]_RefSeq_201408 May 2014
Assembly v1.0
Annotation v101

Xu X, Nagarajan H, Lewis NE et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology, 29(8), 735-741 (2011). [LINK]

2) CHO-K1[ATCC]_RefSeq_201215 March 2012
Assembly v1.0
Annotation v1

Xu X, Nagarajan H, Lewis NE et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology, 29(8), 735-741 (2011). [LINK]

3) CH_RefSeq_201408 May 2014
Assembly v1.0
Annotation v101

Lewis NE, Liu X, Li Y et al. Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome. Nature Biotechnology, 31(8), 759-765 (2013). [LINK]

4) CHO-K1[ATCC]_GenBank_201126 August 2011
Assembly v1.0

Xu X, Nagarajan H, Lewis NE et al. The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line. Nature Biotechnology, 29(8), 735-741 (2011). [LINK]

5) CH-17A/GY_Chr_GenBank_201329 August 2013
Assembly v1.0

Brinkrolf K, Rupp O, Laux H et al. Chinese hamster genome sequenced from sorted chromosomes. Nature Biotechnology, 31(8), 694-695 (2013). [LINK]


Database Naming Convention:

CHO Chinese hamster ovary cell line

CH Chinese hamster cell

CH(O)-xxxx Strain definition

[xxxx] Source of cells

GenBank GenBank assembly

RefSeq RefSeq assembly

Chr Chromosomal identification

Assembly Color Key:

RefSeq Assembly
GenBank Assembly

Assembly ID Key:

CHO-K1 RefSeq (GCF_000223135.1)
CH RefSeq (GCF_000419365.1)
CHO-K1 GenBank (GCA_000223135.1)
CH GenBank (GCA_000419365.1)
CH-17A/GY GenBank (GCA_000448345.1)